介绍
下载
使用
批量的树文件处理,非常nice。
我在批量修改基因树 id 时,碰见过 bug,不过无伤大雅。
If you use the Newick Utilities for published work, please cite: T. Junier and E. M. Zdobnov. The Newick Utilities: High-throughput Phylogenetic tree Processing in the UNIX Shell. Bioinformatics, May 2010
nw_clade
Extracts subtrees specified by node labels
nw_condense
Condenses (simplifies) trees
nw_display
Shows trees as graphs (ASCII graphics or SVG)
nw_duration
Convert node ages into duration
nw_distance
Prints distances between nodes, in various ways
nw_ed
Stream editor (`a la sed or awk); see also nw luaed and nw sched
nw_gen
Random tree generator
nw_indent
Shows Newick in indented form
nw_labels
Prints node labels
nw_luaed
Like nw ed, but uses Lua
nw_match
Finds matches of a tree in another one
nw_order
Orders tree (preserving topology)
nw_prune
Removes branches based on labels
nw_rename
Changes node labels according to a mapping
nw_reroot
(Re)roots the tree
nw_sched
Like nw luaed, but uses Scheme
nw_stats
Prints tree statistics and properties
nw_support
Computes bootstrap support of a tree given replicate trees
nw_topology
Alters branch properties, preserving topology
nw_trim
rims a tree at a specified depth
参考
http://gensoft.pasteur.fr/docs/newick-utils/(进入可下载 PDF 介绍)
简书 | Mr_我爱读文献 | 系统发育树shell工具Newick Utilities