官方在 GitHub 给出的源码(https://github.com/deepmind/alphafold)默认是基于 Docker 环境安装的,非 Docker 环境的安装参考:

    If you wish to run AlphaFold using Singularity (a common containerization platform on HPC systems) we recommend using some of the third party Singularity setups as linked in #10 or #24.

    问题一:
    dm-tree 模块安装失败,需要把 alphafold-2.2.0/requirements.txt 中 dm-tree==0.1.6 调整为 dm-tree==0.1.7
    问题二:

    • sh download_db.sh -d 数据库比较大,需要很长时间下载!
    • 如提示**realpath: command not found**,可以使用**readlink -f**进行替换!