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2022-07-13 01:44:23
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ROSALIND生信习题
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Bioinformatics theory
待整理
名词
Gene Ontology: tool for the unification of biology
《生物信息学》——刘娟
第一章、绪论
第二章、序列数据库资源
第三章、序列对比与对比搜索
第四章、基因组结构注释
第五章、分子系统发生分析
第六章、蛋白质结构
第七章、蛋白质序列分析与功能预测
第八章、微阵列数据分析
第九章、蛋白质组数据分析
第十章、疾病相关研究
第十一章、SNP芯片及深度测序数据分析
本科生信相关课程
第一章、绪论
第二章、组学基本理论
第三章、linux基本操作 生信软件安装
第四章、基因组测序与序列组装
第五章、基因组注释介绍及分析
第六章、转录组分析
第七章、重测序分析
第八章、蛋白组学
第九章、代谢组学
课程论文:测序技术
研一生信相关课程
计算生物学方法与应用
生物信息学—李校
Introduction to Bioinformatics
Genomics
序列比对
数据库
Bioinformatics Algorithm
An introduction to Bioinformatics Algorithms
第二章、算法和时间复杂度
第四章、穷举搜索算法
第五章、贪心算法
Bioinformatics Algorithms: An Active Learning Approach 2nd Edition
3
1、WHERE IN THE GENOME DOES DNA REPLICATION BEGIN?
2、WHICH DNA PATTERNS PLAY THE ROLE OF MOLECULAR CLOCKS?
Bioinformatics Algorithms: Design and Implementation in Python
Online resources
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ROSALIND生信习题
Bioinformatics Stronghold
入门题
Independent Alleles
Creating a Distance Matrix
Introduction to Set Operations
Introduction to Random Strings
Calculating Expected Offspring
Inferring mRNA from Protein
Finding a Spliced Motif
Open Reading Frames
Finding a Protein Motif
Transitions and Transversions
Calculating Protein Mass
Counting DNA Nucleotides
Transcribing DNA into RNA
Computing GC Content
Mendel's First Law
Translating RNA into Protein
Complementing a Strand of DNA
RNA Splicing
Counting Point Mutations(汉明距离)
Consensus and Profile
回溯算法
Counting Subsets
Ordering Strings of Varying Length Lexicographically
Enumerating k-mers Lexicographically
k-Mer Composition
Enumerating Gene Orders
Enumerating Oriented Gene Orderings
Partial Permutations
动态规划
Finding Disjoint Motifs in a Gene
Global Alignment with Scoring Matrix and Affine Gap Penalty
Global Alignment with Constant Gap Penalty
Finding Disjoint Motifs in a Gene
Local Alignment with Scoring Matrix
Global Alignment with Scoring Matrix
Counting Optimal Alignments
Mortal Fibonacci Rabbits
Interleaving Two Motifs
Finding a Shared Motif
Locating Restriction Sites
Rabbits and Recurrence Relations
Longest Increasing Subsequence
Finding a Shared Spliced Motif
Edit Distance
Edit Distance Alignment
图论
Introduction to Pattern Matching
Counting Phylogenetic Ancestors
Error Correction in Reads
Completing a Tree
Genome Assembly as Shortest Superstring
Overlap Graphs
Reversal Distance
Sorting by Reversals
Algorithmic Heights
Insertion Sort
2.Binary Search
pipeline
GATK
Base Quality Score Recalibration (BQSR)
Variant Quality Score Recalibration (VQSR)
01.QC
02.trim
富集分析
生存分析
Part I: Basic concepts and first analyses
survival analysis, Cox
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