• Finding Disjoint Motifs in a Gene
• Global Alignment with Scoring Matrix and Affine Gap Penalty
• Global Alignment with Constant Gap Penalty
• Finding Disjoint Motifs in a Gene
• Local Alignment with Scoring Matrix
• Global Alignment with Scoring Matrix
• Counting Optimal Alignments
• Mortal Fibonacci Rabbits
• Interleaving Two Motifs
• Finding a Shared Motif
• Locating Restriction Sites
• Rabbits and Recurrence Relations
• Longest Increasing Subsequence
• Finding a Shared Spliced Motif
• Edit Distance
• Edit Distance Alignment