Visualization

Juicebox

https://aidenlab.org/juicebox/ https://github.com/igvteam/juicebox.js https://github.com/igvteam/juicebox-web

HiGlass

https://github.com/higlass/higlass

HiCPlotter

https://github.com/kcakdemir/HiCPlotter

4DN Web Portal

https://www.4dnucleome.org/software.html

igv.js

https://github.com/etal/IGV/blob/master/docs/readme_hic.txt

3D Genome

http://3dgenome.fsm.northwestern.edu/

GIVE

https://www.givengine.org/

WashU

http://epigenomegateway.wustl.edu/ https://eg.readthedocs.io/en/latest/

JBrowse2

http://jbrowse.org/demos/cancer-demo-2020/