https://snakemake.readthedocs.io/

安装

pip install snakemake
conda install snakemake

运行

本地

snakemake  # -s Snakefile
snakemake -s hello.snk

SGE

• https://stackoverflow.com/questions/55757440/snakemake-cluster-command-with-mem-mb-resources-in-multiple-cluster-environments
• https://snakemake.readthedocs.io/en/latest/snakefiles/configuration.html

snakemake -p -j 12 \
  --verbose \
  --cluster "qsub -V -cwd -l vf=40G -q disease.q -q disease1.q -o logs/ -e logs/"