由於語法渲染問題而影響閱讀體驗， 請移步博客閱讀～
本文GitPage地址

samtools

Quick start

  1. samtools tview sorted.bam Trinity.fasta   -p "ID:35" -d T > result
  3. samtools tview sorted.bam ../../2-Trinity/Trinity.fasta   -p "comp0_c0_seq1:35" -d H > 123.html
  1. *.bam file *.fasta file  -p  posation, fasta name and star posation of the fasta :

Install

wget -c https://github.com/samtools/samtools/releases/download/1.12/samtools-1.12.tar.bz2
tar -xjf samtools-1.12.tar.bz2
cd samtools-1.12
ls
./configure
make & make install

Install through conda

conda install sra-tools

Sorting by bam files

samtools sort bwa.bam -o bwa.sorted.bam > bwa.sorted.bam

Index

samtools faidx genome.fna

Enjoy~

本文由Python腳本GitHub/語雀自動更新

由於語法渲染問題而影響閱讀體驗， 請移步博客閱讀～
本文GitPage地址

GitHub: Karobben
Blog:Karobben
BiliBili:史上最不正經的生物狗