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The English version of COVID-19 Genome Assembly
The English version of COVID-19 Genome Assembly
语言:中文 | 章节:18 | 阅读:1710 | 收藏:0 | 评论:0
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Package the pipeline
16. Calculate the number of bases、form a complementary sequence and translate
15.K-mer (Python and R Ngram algorithms)
14. Identify mutations in the viral genomes _Variant QC (Variation visualization)
13.Improved work 2: Different Samtools fastq and SPAdes parameters
12. IQtree building ML evolutionary tree and iTOL visualization
11. Mafft
10. Meta-quast evaluates the assembly results
9. Pilon function 1: Improved assembly
8. SPAdes and parameters
7.Samtools to select reads that are mapped
6.Bwa - MEM
5. The Slurm job submission system
4.What is Bash Scipt
3. Fastp/Trim_galore
2. The format of sequencing reads
1. Get familiar with the Linux system and find sequencing reads for the virus
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