Termux

© Descargar Termux para PC

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Switch to your favorite mirror

termux-change-repo

1. Select all (or whatever you want)
2. Select a mirror
   exp: mirror by Tsinghua University

SSH

pkg install openssh # 安装ssh
passwd # 设置登录密码
ifconfig # 获取ip (手机电脑链接同一路由器/局域网)
whoami # 获取用户名
sshd # 开启 ssh 服务

Now, you can login your termux through ssh:

u0_a450@192.168.0.100 -p8022

Cell Phon Storage Access

##建立storage
termux-setup-storage #(手机需要授予权限)

After executed the code, you can see the directory storage which can connect to your cell phone directories.

Install VNC desktop environment

Document

pkg install x11-repo
pkg install tigervnc
# setup server
vncserver -localhost
# kill desktop
vncserver -kill :1

xfce4 desktop

pkg install xfce4
export DISPLAY=":1"
xfce4-session &
apt install aterm twm

PS:
Though it seems have a ‘perfect’ desktop environment, it can’t show the result of the plot from R and python .

errors

E: Failed to fetch https://10.via0.com/ipns/k51qzi5uqu5dg9vawh923wejqffxiu9bhqlze5f508msk0h7ylpac27fdgaskx/pool/main/libs/libsm/libsm_1.2.3-17_aarch64.deb  521  Origin Down [IP: 172.67.212.200 443]
E: Failed to fetch https://10.via0.com/ipns/k51qzi5uqu5dg9vawh923wejqffxiu9bhqlze5f508msk0h7ylpac27fdgaskx/pool/main/libx/libxext/libxext_1.3.4-11_aarch64.deb  521  Origin Down [IP: 172.67.212.200 443]
E: Unable to fetch some archives, maybe run apt-get update or try with --fix-missing?

Connection is unstable, try it few more times.

apt install tigervnc

Some other packages

apt install vim vim-gtk vim-python wget

pythonenv

wget http://python.org/ftp/python/3.7.6/Python-3.7.6.tar.xz
tar xf Python-3.7.6.tar.xz
cd Python-3.7.6
./configure --enable-optimizations
make altinstall
rm -rf ../Python*xz

kivyenv

pip install -i https://pypi.tuna.tsinghua.edu.cn/simple kivy  
pip install -i https://pypi.tuna.tsinghua.edu.cn/simple pillow

hello world example: Kivy hello world

R

Conor I. Anderson

pkg install curl gnupg
mkdir -p "$PREFIX/etc/apt/sources.list.d/"
echo "deb https://its-pointless.github.io/files/24 termux extras" > "$PREFIX/etc/apt/sources.list.d/pointless.list"
curl "https://its-pointless.github.io/pointless.gpg" | apt-key add
pkg install r-base

Install linux

The troditional way (which I faild = =)

想做个好人 2020

apt install openssl
pkg install wget proot
wget https://raw.githubusercontent.com/Neo-Oli/termux-ubuntu/master/ubuntu.sh
bash ubuntu.sh

Tmoe-linux

青菜芋子 2020
Tmoe-repository

You just need run one of them three. I failed for execute the first and succesed on the second.

#bash -c "$(curl -L git.io/linux.sh)"
bash -c "$(curl -L l.tmoe.me)"
#bash -c "$(curl -L https://gitee.com/mo2/linux/raw/2/2)"

Arch in Tmoe

# add a user 'ken'
useradd ken
# add a password for urser 'ken'
passwd ken  
# use root acount or run with sudo
vim /etc/sudoers
# siwtch to user ken
su ken

Find the line “root ALL=(ALL) ALL” and add a line:

ken  ALL=(ALL)    ALL

save and quite

pacman -S r tk
# tk for matplotlib
pip install radian matplotlib docutils  pygments  pygame

Matplotlib doesn’t show graph

import matplotlib
matplotlib.use('TkAgg')

kivy

Don’t install kivy while pip!!!

pacman -S python sdl2_image sdl2_mixer sdl2_ttf   python-setuptools  sdl2
pacman -S python-pygame python-kivy

openCV

pip install opencv-python

Some other Softwarw

sudo pacman -Sy yay python-conda
chmod +777 /usr/bin/conda
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/
channel conda config -- remove
conda create --name Bio
source activate
# (base) [user@localhost Desktop]$
conda activate Bio
# (Bio) [user@localhost Desktop]$
sudo pacman -Sy zlib

requests idna chardet urllib3 six

Error

Unable to establish SSL connection.

apt install openssl

Install R in Jupyter Notebook

pip3 install notebook

install.packages("remotes")
remotes::install_github('IRkernel/IRkernel')
# Connect to Jupyter Notebook
IRkernel::installspec()
# 或者是在系统下安装
IRkernel::installspec(user = FALSE)

Enable Jupyter notebook remote (local) computer
Lup Peng 2017

jupyter notebook --generate-config
vim ./.jupyter/jupyter_notebook_config.py

  #------------------------------------------------------------------------------
  # NotebookApp(JupyterApp) configuration
  #------------------------------------------------------------------------------
  ...
  ## The IP address the notebook server will listen on.
  #c.NotebookApp.ip = 'localhost'
+ c.NotebookApp.ip = '0.0.0.0'

jupyter notebook password

blast+

apt install blast2

Trinity-try

dependency

apt install cd autoconf
apt install cd automake

# download the trinity. I used the mirror which is more stable in China
wget -c https://github.com.cnpmjs.org/trinityrnaseq/trinityrnaseq/releases/download/v2.12.0/trinityrnaseq-v2.12.0.FULL.tar.gz
tar -zxvf trinityrnaseq-v2.12.0.FULL.tar.gz
cd trinityrnaseq-v2.12.0
make

problem

Err:1 https://termux.org/packages stable/main aarch64 m4 aarch64 1.4.18-3
  <span style="color:salmon">OpenSSL SSL_connect: SSL_ERROR_SYSCALL in connection to termux.org:443</span>
Err:2 https://termux.org/packages stable/main aarch64 autoconf all 2.71
  OpenSSL SSL_connect: SSL_ERROR_SYSCALL in connection to termux.org:443
Unable to correct missing packages.
E: Failed to fetch https://termux.org/packages/pool/main/m/m4/m4_1.4.18-3_aarch64.deb  OpenSSL SSL_connect: SSL_ERROR_SYSCALL in connection to termux.org:443
E: Failed to fetch https://termux.org/packages/pool/main/a/autoconf/autoconf_2.71_all.deb  OpenSSL SSL_connect: SSL_ERROR_SYSCALL in connection to termux.org:443
E: Aborting install.

Reason: failed to connect the github
Set a proxy / VPN

During make

cannot find required auxiliary files: config.guess config.sub

apt install automake
vim /data/data/com.termux/files/home/Biosoft/trinityrnaseq-v2.11.0/trinity-plugins/bamsifter/build_htslib.sh

set -e -v

cd htslib
automake -a
mkdir -p build
autoheader
autoconf
./configure --prefix=`pwd`/build/
make
make install

error: /bin/sh

checking host system type... Invalid configuration `unknown-Linux': machine `unknown' not recognized
configure: error: /bin/sh ./config.sub unknown-Linux failed

sed -i 's=CONFIG_SHELL-/bin/sh=CONFIG_SHELL-/data/data/com.termux/files/usr/bin/sh=' /data/data/com.termux/files/home/Biosoft/trinityrnaseq-v2.11.0/trinity-plugins/bamsifter/htslib/configure | grep "/bin/sh"

Github issue

curl -O http://ftp.gnu.org/gnu/autoconf/autoconf-2.69.tar.gz
tar zxvf autoconf-2.70.tar.gz
cd autoconf-2.70
./configure && make

# add to path
source ~/.bashrc

export PATH=$PATH:/data/data/com.termux/files/home/Softwarw/autoconf-2.70/bin
#:wq! exit

source ~/.bashrc

module Autom4te::ChannelDefs

Can't locate Autom4te/ChannelDefs.pm in @INC (you may need to install the Autom4te::ChannelDefs module) (@INC contains: /usr/local/share/autoconf /data/data/com.termux/files/usr/lib/perl5/site_perl/5.30.0/aarch64-android /data/data/com.termux/files/usr/lib/perl5/site_perl/5.30.0 /data/data/com.termux/files/usr/lib/perl5/5.30.0/aarch64-android /data/data/com.termux/files/usr/lib/perl5/5.30.0 .) at /data/data/com.termux/files/home/Softwarw/autoconf-2.69/bin/autoheader line 41.

Problem: lack of perl modules

By perldoc perllocal

We can find the module was in /data/data/com.termux/files/usr/lib/perl5/site_perl/5.30.0 directory

Wed May 12 15:19:24 2021: "Module" Test::Warnings
  *   "installed into:
      /data/data/com.termux/files/usr/lib/perl5/site_perl/5.30.0"
  *   "LINKTYPE: dynamic"
  *   "VERSION: 0.030"
  *   "EXE_FILES: "
Wed May 12 15:19:26 2021: "Module" File::Slurper

So, we can make the soft link

ln -s  /data/data/com.termux/files/home/Softwarw/autoconf-2.70/lib/Autom4te /data/data/com.termux/files/usr/lib/perl5/site_perl/5.30.0/Autom4te

/usr/local/bin/

cd bamsifter && make
make[2]: Entering directory '/data/data/com.termux/files/home/Biosoft/trinityrnaseq-v2.12.0/trinity-plugins/bamsifter'
./build_htslib.sh

cd htslib
mkdir -p build
autoheader
sh: 1: /usr/local/bin/autom4te: not found
autoheader: '/usr/local/bin/autom4te' failed with exit status: 127
make[2]: *** [Makefile:10: htslib/version.h] Error 127

/data/data/com.termux/files/home/Biosoft/trinityrnaseq-v2.12.0/trinity-plugins/bamsifter/build_htslib.sh

Problem: in ‘./trinity-plugins/bamsifter/htslib/Makefile’ file, it assigned the prefix = /usr/local

- prefix    = /usr/local
+ prefix    = /data/data/com.termux/files/usr/
exec_prefix = $(prefix)
bindir      = $(exec_prefix)/bin
.
.
.
- $ENV{'SHELL'} = '/bin/sh' if ($^O eq 'dos');
- $ENV{'SHELL'} = '/data/data/com.termux/files/usr/bin/sh' if ($^O eq 'dos');

/data/data/com.termux/files/home/Softwarw/autoconf-2.70/bin/autoheader

This error actually comes form autoheader file:
my $autom4te = $ENV{'AUTOM4TE'} || '/usr/local/bin/autom4te';
We need to change it into:
my $autom4te = $ENV{'AUTOM4TE'} || '/data/data/com.termux/files/home/Softwarw/autoconf-2.70/bin/autom4te'

sed -i 's=/usr/local/bin/autom4te=/data/data/com.termux/files/home/Softwarw/autoconf-2.70/bin/autom4te='  /data/data/com.termux/files/home/Softwarw/autoconf-2.70/bin/autoheader|grep "{'AUTOM4TE'}"

cd htslib
mkdir -p build
autoheader
autom4te: cannot open < /usr/local/share/autoconf/autom4te.cfg: No such file or directory
autoheader: '/data/data/com.termux/files/home/Softwarw/autoconf-2.69/bin/autom4te' failed with e

/data/data/com.termux/files/home/Softwarw/autoconf-2.69/bin/autom4te

- my $pkgdatadir = $ENV{'autom4te_perllibdir'} || '/usr/local/share/autoconf';
+ my $pkgdatadir = $ENV{'autom4te_perllibdir'} || '/data/data/com.termux/files/home/Softwarw/autoconf-2.69/lib/';

cd htslib
mkdir -p build
autoheader
autom4te: m4sugar/m4sugar.m4: no such file or directory

/data/data/com.termux/files/home/Softwarw/autoconf-2.69/bin/autom4te

- my $pkgdatadir = $ENV{'AC_MACRODIR'} || '/usr/local/share/autoconf';
+ my $pkgdatadir = $ENV{'AC_MACRODIR'} || '/data/data/com.termux/files/home/Softwarw/autoconf-2.69/bin/';

autoheader
autom4te: cannot open < /data/data/com.termux/files/home/Softwarw/autoconf-2.69/bin/autom4te.cfg: Not a directory
autoheader: '/data/data/com.termux/files/home/Softwarw/autoconf-2.69/bin/autom4te' failed with exit status: 1
mak

/data/data/com.termux/files/home/Softwarw/autoconf-2.69/bin/autom4te

- load_configuration ($ENV{'AUTOM4TE_CFG'} || "$pkgdatadir/autom4te.cfg");
+ load_configuration ($ENV{'AUTOM4TE_CFG'} || "/data/data/com.termux/files/home/Softwarw/autoconf-2.69/lib/autom4te.cfg");

autom4te.cfg

autoheader
autom4te: error: cannot open /usr/local/share/autoconf/autom4te.cfg: No such file or directory

sed  -i 's=/usr/local/share/autoconf=/data/data/com.termux/files/home/Softwarw/autoconf-2.70/lib=' /data/data/com.termux/files/home/Softwarw/autoconf-2.70/bin/autom4te |grep "/data/data/com."

‘s=/usr/local/share/autoconf=/data/data/com.termux/files/home/Softwarw/autoconf-2.69/lib=’

I finally installed 2.71

perl doesn’t support multithreads

./Configure -des -Dprefix=/data/data/com.termux/files/usr/local/perl

-Dusethreads -Uinstalluserbinperl

R

apt install r-base

miniconda

# download miniconda
wget -c https://mirrors.tuna.tsinghua.edu.cn/anaconda/miniconda/Miniconda3-py39_4.9.2-Linux-x86_64.sh

# blast+
apt install blast2 bowtie bowtie2

Enjoy~

本文由Python腳本GitHub/語雀自動更新

由於語法渲染問題而影響閱讀體驗， 請移步博客閱讀～
本文GitPage地址

GitHub: Karobben
Blog:Karobben
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