Courses

入门：

https://www.youtube.com/watch?v=tlf6wYJrwKY&list=PLblh5JKOoLUJo2Q6xK4tZElbIvAACEykp

rna-seq实战：

https://so.csdn.net/so/search/blog?q=%E8%BD%AC%E5%BD%95%E7%BB%84%E5%85%A5%E9%97%A8&t=blog&p=1&s=0&tm=0&lv=-1&ft=0&l=&u=u012110870

chip-seq：

ChIP-seq基础入门_xuzhougeng blog-CSDN博客

Mapping

  1. Introduction to RNA-Seq using high-performance computing: 比对最基本的summary，包括一些比对的模式、原理、结果展示和一些上下游介绍。 https://hbctraining.github.io/Intro-to-rnaseq-hpc-O2/schedule/

Principle

Mapping

  1. https://github.com/hbctraining/Intro-to-rnaseq-hpc-O2/blob/master/lectures/Sequence_alignment.pdf:最基本的比对原理

Manual

Mapping

  1. HISAT2: http://daehwankimlab.github.io/hisat2/manual/
  2. Tophat2: https://ccb.jhu.edu/software/tophat/manual.shtml
  3. STAR: STARmanual.pdf