image.png

RColorBrewer

  1. netAnalysis_signalingRole_heatmap(
  2.   object,
  3.   signaling = NULL,
  4.   pattern = c("outgoing", "incoming", "all"),
  5.   slot.name = "netP",
  6.   color.use = NULL,
  7.   color.heatmap = "BuGn",#sequential palettes
  8.   title = NULL,
  9.   width = 10,
  10.   height = 8,
  11.   font.size = 8,
  12.   font.size.title = 10,
  13.   cluster.rows = FALSE,
  14.   cluster.cols = FALSE
  15. )
  1. netVisual_heatmap(
  2.   object,
  3.   comparison = c(1, 2),
  4.   measure = c("count", "weight"),
  5.   signaling = NULL,
  6.   slot.name = c("netP", "net"),
  7.   color.use = NULL,
  8.   color.heatmap = c("#2166ac", "#b2182b"),#指定brewal.pal里的配色
  9.   title.name = NULL,
  10.   width = NULL,
  11.   height = NULL,
  12.   font.size = 8,
  13.   font.size.title = 10,
  14.   cluster.rows = FALSE,
  15.   cluster.cols = FALSE,
  16.   sources.use = NULL,
  17.   targets.use = NULL,
  18.   remove.isolate = FALSE,
  19.   row.show = NULL,
  20.   col.show = NULL
  21. )